[Networkit] unable to install Networkit (pip3 install)

Riyadh Alnasser ray.alnasser at gmail.com
Fri Nov 4 02:21:09 CET 2016


hey guys,

I'm trying to install networkit on my mac and unfortunately i'm not able to
do so!

using pip3 install networkit, I get the error below.

I would really appreciate if someone could kindly advice on this.

Thanks,
-Ray


pip3 install networkit

Collecting networkit

  Using cached networkit-4.1.1.tar.gz

Installing collected packages: networkit

  Running setup.py install for networkit ... error

    Complete output from command
/Library/Frameworks/Python.framework/Versions/3.5/bin/python3.5 -u -c
"import setuptools,
tokenize;__file__='/private/var/folders/4r/fsvyk3q51k3bv6cl55ldr2jh0000gn/T/pip-build-iuhu7yxc/networkit/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
install --record
/var/folders/4r/fsvyk3q51k3bv6cl55ldr2jh0000gn/T/pip-7k1wf_6k-record/install-record.txt
--single-version-externally-managed --compile:


/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/Cython/Distutils/old_build_ext.py:30:
UserWarning: Cython.Distutils.old_build_ext does not properly handle
dependencies and is deprecated.

      "Cython.Distutils.old_build_ext does not properly handle dependencies
"

    running install

    running build

    running build_py

    creating build

    creating build/lib.macosx-10.6-intel-3.5

    creating build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/__init__.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/algebraic.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/centrality.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/clique.py -> build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/coarsening.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/coloring.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/community.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/components.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/correlation.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/distance.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/dynamic.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/engineering.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/flow.py -> build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/generators.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/GEXFIO.py -> build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/globals.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/graph.py -> build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/graphio.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/GraphMLIO.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/linkprediction.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/matching.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/nxadapter.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/partitioning.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/plot.py -> build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/sampling.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/scd.py -> build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/simulation.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/sparsification.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/stats.py -> build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/stopwatch.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/structures.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/viztasks.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    copying networkit/workflows.py ->
build/lib.macosx-10.6-intel-3.5/networkit

    creating build/lib.macosx-10.6-intel-3.5/networkit/gephi

    copying networkit/gephi/__init__.py ->
build/lib.macosx-10.6-intel-3.5/networkit/gephi

    copying networkit/gephi/csv.py ->
build/lib.macosx-10.6-intel-3.5/networkit/gephi

    copying networkit/gephi/pyclient.py ->
build/lib.macosx-10.6-intel-3.5/networkit/gephi

    copying networkit/gephi/streaming.py ->
build/lib.macosx-10.6-intel-3.5/networkit/gephi

    creating build/lib.macosx-10.6-intel-3.5/networkit/profiling

    copying networkit/profiling/__init__.py ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling

    copying networkit/profiling/job.py ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling

    copying networkit/profiling/multiprocessing_helper.py ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling

    copying networkit/profiling/plot.py ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling

    copying networkit/profiling/profiling.py ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling

    copying networkit/profiling/stat.py ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling

    creating build/lib.macosx-10.6-intel-3.5/networkit/test

    copying networkit/test/__init__.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test

    copying networkit/test/test_algorithms.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test

    copying networkit/test/test_community.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test

    copying networkit/test/test_graphio.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test

    copying networkit/test/test_sparsification.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test

    creating build/lib.macosx-10.6-intel-3.5/networkit/test/extension

    copying networkit/test/extension/__init__.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test/extension

    copying networkit/test/extension/test.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test/extension

    creating build/lib.macosx-10.6-intel-3.5/networkit/test/gephi

    copying networkit/test/gephi/__init__.py ->
build/lib.macosx-10.6-intel-3.5/networkit/test/gephi

    creating build/lib.macosx-10.6-intel-3.5/networkit/profiling/html

    copying networkit/profiling/html/measure.html ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/html

    copying networkit/profiling/html/overlay.html ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/html

    copying networkit/profiling/html/profile.html ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/html

    copying networkit/profiling/html/profiling.css ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/html

    copying networkit/profiling/html/profiling.js ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/html

    creating build/lib.macosx-10.6-intel-3.5/networkit/profiling/latex

    copying networkit/profiling/latex/measure.tex ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/latex

    copying networkit/profiling/latex/profile.tex ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/latex

    creating build/lib.macosx-10.6-intel-3.5/networkit/profiling/description

    copying networkit/profiling/description/descriptions.txt ->
build/lib.macosx-10.6-intel-3.5/networkit/profiling/description

    running build_ext

    initializing NetworKit compilation with: scons --optimize=Opt
--target=Core -j8 --compiler=g++-4.8 --std=c++11

    scons: Reading SConscript files ...

    scons: done reading SConscript files.

    scons: Building targets ...

    g++-4.8 -o .buildOpt/algebraic/AdjacencyMatrix.o -c -std=c++11 -Wall -c
-fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/AdjacencyMatrix.cpp

    g++-4.8 -o .buildOpt/algebraic/CSRMatrix.o -c -std=c++11 -Wall -c
-fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/CSRMatrix.cpp

    g++-4.8 -o .buildOpt/algebraic/DenseMatrix.o -c -std=c++11 -Wall -c
-fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/DenseMatrix.cpp

    g++-4.8 -o .buildOpt/algebraic/DiagonalMatrix.o -c -std=c++11 -Wall -c
-fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/DiagonalMatrix.cpp

    g++-4.8 -o .buildOpt/algebraic/IncidenceMatrix.o -c -std=c++11 -Wall -c
-fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/IncidenceMatrix.cpp

    g++-4.8 -o .buildOpt/algebraic/LaplacianMatrix.o -c -std=c++11 -Wall -c
-fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/LaplacianMatrix.cpp

    g++-4.8 -o .buildOpt/algebraic/Matrix.o -c -std=c++11 -Wall -c
-fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG -DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/Matrix.cpp

    g++-4.8 -o .buildOpt/algebraic/NormalizedLaplacianMatrix.o -c
-std=c++11 -Wall -c -fmessage-length=0 -fPIC -fopenmp -O3 -DNDEBUG
-DLOG_LEVEL=LOG_LEVEL_INFO
networkit/cpp/algebraic/NormalizedLaplacianMatrix.cpp

    /var/tmp//ccjpmACO.s:17:expecting string instruction after `rep'

    /var/tmp//ccjpmACO.s:56:expecting string instruction after `rep'

    scons: *** [.buildOpt/algebraic/DenseMatrix.o] Error 1

    /var/tmp//ccQIWyVP.s:17:expecting string instruction after `rep'

    /var/tmp//ccQIWyVP.s:56:expecting string instruction after `rep'

    /var/tmp//ccQIWyVP.s:3864:expecting string instruction after `rep'

    /var/tmp//ccQIWyVP.s:3869:expecting string instruction after `rep'

    scons: *** [.buildOpt/algebraic/Matrix.o] Error 1

    /var/tmp//ccwMNuZI.s:17:expecting string instruction after `rep'

    scons: *** [.buildOpt/algebraic/CSRMatrix.o] Error 1

    scons: building terminated because of errors.

    scons returned an error, exiting setup.py



    ----------------------------------------
Command "/Library/Frameworks/Python.framework/Versions/3.5/bin/python3.5 -u
-c "import setuptools,
tokenize;__file__='/private/var/folders/4r/fsvyk3q51k3bv6cl55ldr2jh0000gn/T/pip-build-iuhu7yxc/networkit/setup.py';exec(compile(getattr(tokenize,
'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))"
install --record
/var/folders/4r/fsvyk3q51k3bv6cl55ldr2jh0000gn/T/pip-7k1wf_6k-record/install-record.txt
--single-version-externally-managed --compile" failed with error code 1 in
/private/var/folders/4r/fsvyk3q51k3bv6cl55ldr2jh0000gn/T/pip-build-iuhu7yxc/networkit/
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